aw, what a mess, sorry to hear about your further problems. First off, did they clean the breather system, the cause of the failed cam cover gaskits? If not they will just blow again. Guide in maintenance section.
2 if oil in wells then likely the plug leads have had it anyway as the oil attacks the rubber with the heat from the engine. Cheapo jobs can be had from eurocar parts fro 35quid, but they are not numbered and are not the correct length for the omega but they will do. Vx want 120 a side iirc.
3 if the leads have been changed and still miss firing then change the plugs. If still no good then that only leaves the dis pac. Some breakers on here can help for reasonable money.
4 i dont have first hand experience of the knock sensor wire/issue but obviously un trap it and check for damage to the wire.
5 i would be taking pictures of the bad workmanship from vx and making a case for compensation. Breaking stuff on you car is one thing but hack sawing bits off is just vandalism. Maybe check the scuttle is not broken or cracked as they probably did not know about the clips and just pulling on it can break the plastic around the wiper hole. Also insure the rubber is still glued to the bottom of the windscreen and that no water can get in as this can bugger the wiper mechanism and leak on the dis pac etc.
6 crank sensor code should go after a phew trouble free starts(30 should be enough) but you may prefer to just fit a genuine vx item as its not safe to drive with a bad sensor. The engine could well cut out at random and leaves you with no power assisted stearing or brakes.
Let us know how you get on, there is not much that gets peoples attention on here more than crap dealer service. Although they are all a bit quiet so far it has to be said...maybe theyll be along shortly.
See how you go with that and dont be shy to keep your thread updated. Best of luck with it, as you dont sound like youve had any so far. Ttfn.
Ps cam cover bolts should be 8nm meters, no more, and can come loose when the rubber orings retract a bit. Wont hurt to check them now and keep an eye on them later.